Gene
smarcc1a
- ID
- ZDB-GENE-080514-3
- Name
- SWI/SNF related BAF chromatin remodeling complex subunit C1a
- Symbol
- smarcc1a Nomenclature History
- Previous Names
-
- smarcc1
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to have histone binding activity. Involved in definitive hemopoiesis and heart morphogenesis. Localizes to cytoplasm and nucleus. Is expressed in head and tail bud. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 12 figures from 3 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| {Hydrocephalus, congenital, 5, susceptibility to} | 620241 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001005 | SANT/Myb domain |
| Domain | IPR007526 | SWIRM domain |
| Domain | IPR017884 | SANT domain |
| Domain | IPR032448 | SMARCC, SWIRM-associated domain |
| Domain | IPR032450 | SMARCC, N-terminal |
| Domain | IPR032451 | SMARCC, C-terminal |
| Domain | IPR049898 | MarR-like, BRCT and chromo domains module |
| Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
| Homologous_superfamily | IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Homologous_superfamily | IPR036420 | BRCT domain superfamily |
Domain Details Per Protein
| Protein | Length | BRCT domain superfamily | Homedomain-like superfamily | MarR-like, BRCT and chromo domains module | SANT domain | SANT/Myb domain | SMARCC, C-terminal | SMARCC, N-terminal | SMARCC, SWIRM-associated domain | SWIRM domain | Winged helix-like DNA-binding domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:F1Q9K1
|
1089 | ||||||||||
|
UniProtKB:A0A8M2B4M4
|
1081 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
smarcc1a-201
(1)
|
Ensembl | 4,601 nt |
Interactions and Pathways
No data available
Plasmids
No data available